Faculty and Staff Publications

Jonathon P. Doubek, Assistant Professor at the Center for Freshwater Research and Education

  • Doubek JP, Campbell KL, Lofton ME, McClure RP, Carey CC. 2019. Hypolimnetic hypoxia increases the biomass variability and compositional variability of crustacean zooplankton communities. Water 11:2179.
  • Carey CC, Ward NK, Farrell KJ, Lofton ME, Krinos AI, McClure RP, Subratie KC, Figueiredo RJ, Doubek JP, Hanson PC, Papadopoulos P, Arzberger P. Enhancing collaboration between ecologists and computer scientists: lessons learned and paths forward. Ecosphere 10:e02753.
  • Doubek JP, Carey CC, Lavender M, Winegardner AK, Beaulieu M, Kelly PT, Pollard AI, Straile D, Stockwell JD. 2019. Calanoid copepod zooplankton density is positively associated with water residence time across the continental United States. PLoS ONE 14:e0209567.
  • Munger ZW, Carey CC, Gerling AB, Doubek JP, Hamre KD, McClure RP, Schreiber ME. 2019. Hydrological vs. oxygenation control on iron and manganese mass budgets in a drinking water reservoir. Lake and Reservoir Management 35:277-291.
  • Mantzouki E, Beklioğlu M, Brookes JD, de Senerpont Domis LN, Dugan HA, Doubek JP, Grossart H-P, Nejstgaard JC, Pollard AI, Ptacnik R, Rose KC, Sadro S, Seelen L, Skaff NK, Teubner K, Weyhenmeyer GA, Ibelings BW. 2018. Snapshot surveys for lake monitoring, more than a shot in the dark. Frontiers in Ecology and Evolution 6:10.3389/fevo.2018.00201.
  • Doubek JP, Campbell KL, Doubek KM, Hamre KD, Lofton ME, McClure RP, Ward NK, Carey CC. 2018. The effects of hypolimnetic anoxia on the diel vertical migration of freshwater crustacean zooplankton. Ecosphere 9:e02332.
  • McCullough IM, Dugan HA, Farrell KJ, Morales-Williams AM, Ouyang Z, Roberts D, Scordo F, Bartlett SL, Burke SM, Doubek JP, Krivak-Tetley FE, Skaff NK, Summers JC, Weathers KC, Hanson PC. 2018. Dynamic modeling of organic carbon fates in lake ecosystems. Ecological Modelling 386:71–82.
  • Hamre KD, McClure RP, Munger ZW, Doubek JP, Gerling AB, Schreiber ME, Carey CC. 2018. In situ fluorometry reveals a persistent, perennial hypolimnetic cyanobacterial bloom in a seasonally anoxic reservoir. Freshwater Science 37:483–495.
  • Carey CC, Hanson PC, Doubek JP, McClure RP. 2018. Oxygen dynamics control the burial of organic carbon in a eutrophic reservoir. Limnology and Oceanography-Letters 3:293–301.
  • Carey CC, McClure RP, Doubek JP, Lofton ME, Ward NK, Scott DT. 2018. Chaoborus spp. transport CH4 from the sediments to the surface waters in a seasonally anoxic reservoir, but their contribution to water column CH4 concentrations and diffusive efflux is minor. Environmental Science & Technology 52:1165–1173.
  • Dugan HA, Bartlett SL, Burke SM, Doubek JP, Krivak-Tetly FE, Skaff NK, Summers JC, Hanson PC, Weathers KC. 2017. A database of chloride trends in North America and European freshwater lakes. Nature: Scientific Data 4:170101.
  • Hamre KD, Gerling AB, Munger ZW, Doubek JP, McClure RP, Cottingham KL, Carey CC. 2017. Spatial variation in dinoflagellate recruitment along a reservoir ecosystem continuum. Journal of Plankton Research 39:715-728.
  • Doubek JP, Carey CC. 2017. Catchment, morphometric, and water quality characteristics differ between reservoirs and naturally formed lakes on a latitudinal gradient in the conterminous United States. Inland Waters 2:171-180.
  • Dugan HA, Bartlett SL, Burke SM, Doubek JP, Krivak-Tetley FE, Skaff NK, Summers JC, Farrell KJ, McCullough IM, Morales-Williams AM, Roberts D, Scordo F, Ouyang Z, Hanson PC, Weathers KC. 2017. Salting our freshwaters. Proceedings of the National Academy of Sciences 114:4453-4458.
  • Munger ZW, Gerling AB, Carey CC, Hamre KD, Doubek JP, Klepatzki SD, McClure RP, Schreiber ME. 2016. Effectiveness of hypolimnetic oxygenation for preventing accumulation of Fe and Mn in a drinking water reservoir. Water Research 106:1-14.
  • Gerling AB, Munger ZW, Doubek JP, Hamre KD, Gantzer PA, Little JC, Carey CC. 2016. Whole catchment manipulations of internal and external loading reveal the sensitivity of a century-old reservoir to hypoxia. Ecosystems 19:555-571.
  • Doubek JP, Carey CC, Cardinale BJ. 2015. Anthropogenic land use is associated with N-fixing cyanobacterial dominance in lakes across the continental United States. Aquatic Sciences 77:681-694.
  • Doubek JP, Lehman JT. 2014. Historical trophic position of Limnocalanus macrurus in Lake Michigan. Journal of Great Lakes Research 40: 1027-1032.
  • Jackson EW, Doubek JP, Schaeffer JS, Lehman JT. 2013. Historical and recent biomass and food web relations of Limnocalanus macrurus in Lake Huron. Journal of Great Lakes Research 39: 404–408.
  • Lehman JT, Doubek JP, Jackson EW. 2013. Effect of reducing allochthonous P load on biomass and alkaline phosphatase activity of phytoplankton in an urbanized watershed, Michigan. Lake and Reservoir Management 29: 116–125.
  • Doubek JP, Lehman JT. 2011. Historical biomass of Limnocalanus in Lake Michigan. Journal of Great Lakes Research 37: 159–164.
  • Lehman JT, Bell DW, Doubek JP, McDonald KE. 2011. Reduced additions to river phosphorus for three years following implementation of a lawn fertilizer ordinance. Lake and Reservoir Management 27: 390–39

Roger W. Greil, Hatchery Manager at the Center for Freshwater Research and Education

  • Daugherty, D.J., Sutton, T.M. and Greil, R.W., 2003. Life-history characteristics, population structure, and contribution of hatchery and wild steelhead in a Lake Huron tributary. Journal of Great Lakes Research 29(3):511-520
  • Sutton, T.M., Pangle, K.L. and Greil, R.W., 2002. Hatchery performance attributes of Nipigon, Assinica, and Iron River strains of age-0 brook trout. North American Journal of Aquaculture 64(3):188-194
  • Behmer, D.J., Greil, R.W., Greil, D.C. and Fessell, B.P., 1993. Evaluation of cone‐bottom cages for removal of solid wastes and phosphorus from pen‐cultured rainbow trout. The Progressive Fish‐Culturist 55(4):255-260
  • Behmer, D.J., Greil, R.W., Scott, S.J. and Hanna, T., 1993. Harvest and movement of Atlantic salmon stocked in the St. Marys River, Michigan. Journal of Great Lakes Research 19(3):533-540
  • Kennedy, A.J., Greil, R.W., Back, R.C. and Sutton, T.M., 2005. Population characteristics and spawning migration dynamics of pink salmon in US waters of the St. Marys River. Journal of Great Lakes Research 31(1):11-21
  • Bauer, W.F., Sutton, T.M., Greil, R.W. and Ostrand, K.G., 2004, January. Changes in population structure of yellow perch following manual removal. In Proceedings of the Indiana Academy of Science 113(2):109-114
  • Kennedy, A.J., G.B. Steinhart, and R.W. Greil. 2011. A tool to identify pink salmon (Oncorhynchus gorbuscha)× Chinook salmon (O. tshawytscha) hybrids in the St. Marys River, Michigan–Ontario. Journal of Great Lakes Research 37:35-42

Kevin L. Kapuscinski, Assistant Director of Research at the Center for Freshwater Research and Education

  • Crane, D.P., and K.L. Kapuscinski. 2018. Capture efficiency of a fine mesh seine in a large river: implications for abundance, richness, and diversity analyses. Fisheries Research 205:149–157
  • Kapuscinski, K.L., T.D. Simonson, D.P. Crane, S.J. Kerr, J.S. Diana, and J.M. Farrell, editors. 2017. Muskellunge management: fifty years of cooperation among anglers, scientists, and fisheries biologists. American Fisheries Society, Symposium 85, Bethesda, Maryland
  • Crane, D.P., and K.L. Kapuscinski. 2017. Habitat use by age-0 Muskellunge in the upper Niagara River, New York. Pages 227–240 in K.L. Kapuscinski, T.D. Simonson, D.P. Crane, S.J. Kerr, J.S. Diana, and J. M. Farrell, editors. Muskellunge management: fifty years of cooperation among anglers, scientists, and fisheries biologists. American Fisheries Society, Symposium 85, Bethesda, Maryland
  • Farrell, J.M., R.G. Getchell, K.L. Kapuscinski, and S.R. LaPan. 2017. Long-term trends of St. Lawrence River Muskellunge: effects of viral hemorrhagic septicemia and Round Goby proliferation creates uncertainty for population sustainability. Pages 275–302 in K.L. Kapuscinski, T.D. Simonson, D.P. Crane, S.J. Kerr, J.S. Diana, and J.M. Farrell, editors. Muskellunge management: fifty years of cooperation among anglers, scientists, and fisheries biologists. American Fisheries Society, Symposium 85, Bethesda, Maryland
  • Forzono, E.M., D.P. Crane, K.L. Kapuscinski, and M.M. Clapsadl. 2017. Dry-weight energy density of prey fishes from nearshore waters of the upper Niagara River and Buffalo Harbor, New York. Journal of Great Lakes Research 43(3):215–220. Available at: https://doi.org/10.1016/j.jglr.2017.03.009
  • Turnquist, K.N., W.A. Larson, J.M. Farrell, P.A. Hanchin, K.L. Kapuscinski, L.A. Miller, K.T. Scribner, C.C. Wilson, and B.L. Sloss. 2017. Genetic structure of muskellunge in the Great Lakes region and the effects of supplementation on genetic integrity of wild populations. Journal of Great Lakes Research 43(6):1141–1152. Available at: https://www.sciencedirect.com/science/article/pii/S0380133017301557
  • Miller, L.A., J.M. Farrell, K.L. Kapuscinski, K.T. Scribner, B.L. Sloss, K.N. Turnquist, and C.C. Wilson. 2017. A review of Muskellunge population genetics: implications for management and future research needs. Pages 385–414 in K.L. Kapuscinski, T.D. Simonson, D.P. Crane, S.J. Kerr, J.S. Diana, and J.M. Farrell, editors. Muskellunge management: fifty years of cooperation among anglers, scientists, and fisheries biologists. American Fisheries Society, Symposium 85, Bethesda, Maryland
  • Turnquist, K.N., W. Larson, J.M. Farrell, K.L. Kapuscinski, L.A. Miller, K.T. Scribner, C.C. Wilson, and B.L. Sloss. 2017. Spatial genetic structure of Muskellunge in the Great Lakes Region and the effects of supplementation on genetic integrity of remnant stocks. Pages 477–482 in K.L. Kapuscinski, T.D. Simonson, D.P. Crane, S.J. Kerr, J.S. Diana, and J.M. Farrell, editors. Muskellunge management: fifty years of cooperation among anglers, scientists, and fisheries biologists. American Fisheries Society, Symposium 85, Bethesda, Maryland
  • Gunderson, M.D., K.L. Kapuscinski, D.P. Crane, and J.M. Farrell. 2016. Habitats colonized by non-native flowering rush Butomus umbellatus (Linnaeus, 1753) in the Niagara River. Aquatic Invasions 11(4):369–380. Available at: http://www.aquaticinvasions.net/2016/AI_2016_Gunderson_etal.pdf
  • Uzarski, D.G., V.J. Brady, M.J. Cooper, D.A. Wilcox, D.A. Albert, R.P. Axler, P. Bostwick, T.N. Borwn, J.H. Ciborowski, N.P. Danz, J.P. Gathman, T.M. Gehring, G.P. Grabas, A. Garwood, R.W. Howe, L.B. Johnson, G.A. Lamberti, A.H. Moerke, B.A. Murry, G.J. Niemi, C.J. Norment, C.R. Ruetz III, A.D. Steinman, D. Tozer, R. Wheeler, T.K. O’Donnell, and J.P. Schneider. 2016. Standardized measures of coastal wetland condition: Implementation at a Laurentian Great Lakes Basin-wide scale. Wetlands. doi:10.1007/s13157-016-0835-7
  • Crane, D.P., L.M. Miller, J.S. Diana, J.M. Casselman, J.M. Farrell, K.L. Kapuscinski, and J.K. Nohner. 2015. Muskellunge and northern pike ecology and management: a review of important issues and research needs. Fisheries 40(6):258–267. Available at: http://dx.doi.org/10.1080/03632415.2015.1038382
  • Guinan1, M.E., K.L. Kapuscinski, and M.A. Teece. 2015. Seasonal diet shifts and trophic position of an invasive cyprinid, the rudd Scardinius erythrophthalmus, in the upper Niagara River. Aquatic Invasions 10(2):217–225. Available at: http://dx.doi.org/10.3391/ai.2015.10.2.10
  • Kapuscinski, K.L., J.M. Farrell, and M.A. Wilkinson. 2015. Abundance, biomass, and macrophyte consumption by rudd in Buffalo Harbor and the Niagara River, and potential herbivory by grass carp. Journal of Great Lakes Research 41(2):387–395. Available at: http://dx.doi.org/10.1016/j.jglr.2015.02.006
  • Crane, D.P., J.M. Farrell, and K.L. Kapuscinski. 2014. Predicting muskellunge spawning habitat using a Maxent-based approach to model selection. Journal of Great Lakes Research 40:325–335. DOI: 10.1016/j.jglr.2014.02.016
  • Farrell, J.M., K.L. Kapuscinski, and H.B. Underwood. 2014. Fine scale habitat use by age-1 stocked muskellunge and wild northern pike in an upper St. Lawrence River bay. Journal of Great Lakes Research 40:148–153. DOI: 10.1016/j.jglr.2014.01.014
  • Henning, B.F., K.L. Kapuscinski, and J.M. Farrell. 2014. Nearshore fish assemblage structure and habitat relationships in protected and open habitats in the upper St. Lawrence River. Journal of Great Lakes Research 40:154–163. DOI: 10.1016/j.jglr.2013.11.003
  • Kapuscinski, K.L., J.M. Farrell, S.V. Stehman, G.L. Boyer, D.D. Fernando, M.A. Teece, and T.J. Tschaplinski. 2014. Selective herbivory by an invasive cyprinid, the rudd Scardinius erythrophthalmus. Freshwater Biology 59:2315–2327. DOI: 10.1111/fwb.12433
  • Kapuscinski, K.L., J.M. Farrell, G. Paterson, M.A. Wilkinson, L.C. Skinner, and A.J. Gudlewski. 2014. Low concentrations of contaminants in an invasive, omnivorous cyprinid, the rudd (Scardinius erythrophthalmus), in a Great Lakes Area of Concern. Bulletin of Environmental Contamination & Toxicology 93(5):567–573. DOI: 10.1007/s00128-014-1325-3
  • Kapuscinski, K.L., and J.M. Farrell. 2014. Habitat factors influencing fish assemblages at muskellunge nursery sites. Journal of Great Lakes Research 40:135–147. DOI: 10.1016/j.jglr.2012.11.007
  • Kapuscinski, K.L., J.M. Farrell, and M.A. Wilkinson. 2014. Trends in muskellunge population and fishery characteristics in Buffalo Harbor (Lake Erie) and the Niagara River. Journal of Great Lakes Research 40:125–134. DOI: 10.1016/j.jglr.2012.11.006
  • Kapuscinski, K.L., B.L. Sloss, and J.M. Farrell. 2013. Genetic population structure of muskellunge in the Great Lakes. Transactions of the American Fisheries Society 142:1075–1089. DOI: 10.1080/00028487.2013.799515
  • Kapuscinski, K.L., D.P. Crane, and J.K. Noehner. 2013. Biology, ecology, and management of Muskellunge and Northern Pike: new science to meet current and future challenges. Pages 556–557 in Schaeffer, J. 143rd Annual Meeting Wrap Up: Thank You Little Rock. Fisheries 38:553–567
  • Kapuscinski, K.L., J.M. Farrell, and B.A. Murry. 2012. Feeding strategies and diets of young-of-the-year muskellunge in two large river ecosystems. North American Journal of Fisheries Management 32:635–647. DOI:10.1080/02755947.2012.675964
  • Kapuscinski, K.L., J.M. Farrell, and M.A. Wilkinson. 2012. Feeding patterns and population structure of an invasive cyprinid, the rudd Scardinius erythrophthalmus (Cypriniformes, Cyprinidae), in BuffaloHarbor (Lake Erie) and the upper Niagara River. Hydrobiologia 693:169–181. DOI:10.1007/s10750-012-1106-0
  • Kapuscinski, K.L., J.M. Farrell, and M.A. Wilkinson. 2012. First report of abundant rudd populations in North America. North American Journal of Fisheries Management 32:82–86. DOI:10.1080/02755947.2012.661391
  • Kapuscinski, K.L., T.G. Zorn, P.J. Schneeberger, R.P. O’Neal, and B.T. Eggold. 2010. The status of Lake Michigan walleye stocks. In Status of walleye in the Great Lakes: proceedings of the 2006 Symposium. Great Lakes Fishery Commission Technical Report 69. pp. 15–70
  • Kapuscinski, K.L., B.J. Belonger, S. Fajfer, and T.J. Lychwick. 2007. Population dynamics of muskellunge in Wisconsin waters of Green Bay, Lake Michigan, 1989-2005. Environmental Biology of Fishes 79:27–36. DOI:10.1007/s10641-006-9132-2
  • Kapuscinski, K.L., M.J. Hansen, and S.T. Schram. 2005. Movements of lake trout in U.S. waters of Lake Superior, 1973-2001. North American Journal of Fisheries Management 25:696–708. DOI:10.1577/M03-205.1

Ashley H. Moerke, Director of the Center for Freshwater Research and Education

  • Janetski, D., D. Chaloner, A. Moerke, J. O’Keefe, and G. Lamberti. 2012. Resident fishes display elevated organic pollutants in salmon spawning streams of the Great Lakes. Environmental Science & Technology. Doi:10.1021/es301864k
  • Janetski, D., D. Chaloner, A. Moerke, P. Levi, and G. Lamberti. 2014. Novel environmental conditions alter subsidy and engineering effects by introduced Pacific salmon. Canadian Journal of Fisheries and Aquatic Sciences 71(4): 502-513
  • Moerke, A., C. Ruetz, C. Pringle, and T. Simon. 2017. Chapter 19: Macroconsumer-resource interactions in R. Hauer and G. Lamberti, editors. Methods in Stream Ecology, 3rd Edition, Academic Press, CA
  • Collins, S, B. Marshall, and A. Moerke. 2016. Aerial insect responses to non-native Chinook salmon spawning in a Great Lakes tributary. Journal of Great Lakes Research 42(30):630-636
  • Gerig, B., D. Chaloner, D. Janetski, R. Reiske, J. O’Keefe, A. Moerke, and G. Lamberti. 2016. Congener patterns of persistent organic pollutants reveal Pacific salmon contaminant delivery to Great Lakes tributaries. Environmental Science & Technology 50(2):554-563
  • Lauer, T.E., and A.H. Moerke. 2012. Converting your dissertation to a journal manuscript: Guidance to students and mentors for removing impediments and improving success. Pages 111-119 in Scientific Communication for Natural Resource Professionals. American Fisheries Society, Bethesda, Maryland
  • Collins, S., A. Moerke, D. Chaloner, D. Janetski, and G. Lamberti. 2011. Response of dissolved nutrients and periphyton to spawning Pacific salmon in three northern Michigan streams. Journal of the North American Benthological Society 30(3):831-839
  • Janetski, D.J., A.H. Moerke, D.T. Chaloner, and G.A. Lamberti. 2011. Spawning salmon increase brook trout movements in a Lake Michigan tributary. Ecology of Freshwater Fish. doi: 10.1111/j.1600-0633.2010.00479.x
  • Keller, B., R. Back, J. Westrick, M. Werner, B. Evans, A. Moerke, G. Zimmerman, D. Wright, E. Grenfell, and J. Courneya. 2011. Sediment quality at selected sites in the St. Marys Area of Concern. Journal of Great Lakes Research 37 (Suppl 2):12-20
  • Marklevitz, S., B. Fryer, D. Gonder, Z. Yang, J. Johnson, A. Moerke, and Y. Morbey. 2011. Otolith chemistry can discriminate Chinook salmon from different wild populations and hatcheries in Lake Huron. Journal of Great Lakes Research. doi:10.106/j.jglr.2011.08.004
  • Moerke, A.H., and R.M. Werner. 2011. Ecological status of the St. Marys River: Foreword. Journal of Great Lakes Research 37 (Suppl 2)
  • Aumen, N.G., M.E. Gurtz, M.T. Barbour, and A.H. Moerke. 2010. BRIDGES: evolution of basic and applied linkages in benthic science. Journal of the North American Benthological Society 29(1):359-371
  • Dorr, B., A. Moerke, M. Bur, C. Bassett, T. Aderman, D. Traynor, R. Singleton, P. Butchko, J. Taylor II. 2010. Evaluation of harassment of migrating double-crested cormorants to limit depredation on sport fisheries in Michigan. Journal of Great Lakes Research 36:215-223
  • Harriger, K., A. Moerke, and P. Badra. 2009. Distribution and demographics of freshwater mussels in a 1st-order Michigan stream. Michigan Academician XXXIX:149-162
  • Harrison, J., J. Cohen, E. Hinchey, A. Moerke, and P. von Dassow. 2009. Getting the word out and making a difference: Maximizing outreach efforts from the perspective of early-career scientists. Eos (AGU) 90(38):333-334
  • Moerke, A.H., and A. Roy. 2009. Editorial: The future of BRIDGES. Journal of the North American Benthological Society 28: 271–272
  • A. Moerke and G. A. Lamberti. 2006. Scale-dependent controls of water quality, habitat, and fish communities in Michigan (USA) streams. Aquatic Sciences 68(2):193-205
  • Rosi-Marshall, E., A. Moerke, and G. Lamberti. 2006. Ecological responses to rehabilitation of a northern Michigan trout stream. Environmental Management 38(1):99-107
  • Tucker, S., A. Moerke, R. Greil, and G. Steinhart. 2014. Note: First record of natural reproduction by Atlantic Salmon (Salmo salar) in the St. Marys River, Michigan. Journal of Great Lakes Research 40:1022-102
    Bauman, J., A. Moerke, R. Greil, B. Gerig, E. Baker, and J. Chiotti. 2011. Population assessment of lake sturgeon in the St. Marys River, MI. Journal of Great Lakes Research 37 (Suppl 2):47-53
  • Gerig, B., A. Moerke, R. Greil, and S. Koproski. 2011. Movement patterns and habitat characteristics of lake sturgeon (Acipenser fulvescens) in the St. Marys River. Journal of Great Lakes Research 37 (Suppl 2):54-60
  • Turschak, B., A. Moerke, and B. Evans. 2011. Spatial and temporal changes in the zooplankton community of the St. Marys River. Journal of Great Lakes Research 37(Suppl 2):21-27
  • Traynor, D., A. Moerke, and R. Greil. 2010. Identification of Michigan fishes using cleithra. Great Lakes Fishery Commission Miscellaneous Publication 2010-02
  • Moerke, A.H. and G.A. Lamberti. 2006. Effects of watershed land use on stream ecosystems: A multi-stream assessment in the midwestern U.S. Pages 323-338 in R. M. Hughes, L. Wang, and P. W. Seelbach, editors. Landscape influences on stream habitats and biological assemblages. American Fisheries Society Symposium 48, Bethesda, Maryland
  • Moerke, A.H., K.J. Gerard, J.A. Latimore, R.A. Hellenthal, and G.A. Lamberti. 2004. Restoration of an Indiana, USA, stream: Bridging the gap between applied and basic lotic ecology. Journal of the North American Benthological Society 23:647-660
  • Moerke, A.H., and G.A. Lamberti. 2004. Restoring stream ecosystems: Lessons from a midwestern state. Restoration Ecology 12:327-334. (Ranked in the top 3 of most accessed Restoration Ecology articles in 2004)
  • Tillman, D.C., A.H. Moerke, C.L. Ziehl, and G.A. Lamberti. 2003. Subsurface hydrology and degree of burial affect mass loss and invertebrate colonization of leaves in a woodland stream. Freshwater Biology 48:98-107
  • Moerke, A.H. and G.A. Lamberti. 2003. Responses in fish community structure to restoration of two Indiana streams. North American Journal of Fisheries Management 23:748-759